#!/bin/sh

#SBATCH -N 1                  # nodes=4
#SBATCH --ntasks-per-node=8  # ppn=20
#SBATCH -J flipRadRobin1              # job name
#SBATCH -t 12:00:00              # 14:00 is 14 min walltime
#SBATCH --mail-user=your@email.edu
#SBATCH --mail-type=begin
#SBATCH --mail-type=end
module load openmpi

cd /directory/data/

/tigress/lr9/bin/flip_trim_sbfI_150821.pl /directory/bestRADbarcodesAll.txt /directory/inputfile_read_1.fastq /directory/inputfile_read_4.fastq /outputdirectory/outputfile_read_1_FLIP.fastq /outputdirectory/outputfile_read_4_passed_FLIP.fastq